In a medium bowl, melt the chocolate wafers in the microwave at 15 second intervals, stirring in between until the chocolate is completely smooth. Dip the pretzel into the chocolate, coating it entirely.
Place the treats on a parchment paper lined baking sheet.
Add candy eyeballs to the melted chocolate before it cools. Press the candy into the chocolate so that it really sticks.
Repeat the last three steps with the different colored chocolate.
Place the chocolate covered pretzels in the fridge and allow the chocolate to harden completely before serving.