Name: High Protein Gluten Free Air Fryer Bagel
Prep time: 15 min
Cook time: 15 min
Ingredients: 1 cup Greek yogurt; 1 cup Gluten-free flour blend; 1 tsp Baking powder; Cooking spray; 1 Tbsp Bagel seasoning

Jump to Recipe

Whip up these high protein gluten-free air fryer bagels in minutes! Delicious and packed with protein, they’re perfect for a healthy, homemade snack or breakfast!

A hand holds a freshly baked gluten-free everything bagel over an air fryer basket. The bagel boasts a mix of seeds and spices. In the background, theres a sleek white air fryer with the letter B on it, perfect for achieving that crispy finish.

Let’s be real: nothing beats the chewy perfection of a bagel. They’re like the cool cousin of bread—round, versatile, and perfect for breakfast, lunch, or an anytime snack.

But traditional bagels? They’re carb-heavy, take forever to make, and aren’t always the healthiest option.

Too busy to make this right away? Pin it for later! Pin this post to your favorite board on Pinterest and it will be there when you’re ready!

A gluten-free everything bagel is being air fried on parchment paper inside an air fryer basket. The bagel is topped with seeds and spices, showcasing a crispy golden texture.

These recipes for 90-second mug bread and focaccia mug bread are also great for a single serving for gluten-free bread. And these gluten-free oatmeal protein cookies make the perfect sweet treat while these cottage cheese chips are pretty awesome too.

Why You’ll Love This Recipe

Enter high protein gluten-free air fryer bagels! These beauties are made with simple ingredients, packed with extra protein, and air-fried to perfection.

That means they’re not only healthy, but also have that golden-brown, slightly crispy exterior and soft, doughy center we all love. And I can whip them up in just 15 minutes! Bonus: they’re a great way to hit my protein goal while keeping things gluten-free.

A stack of three homemade gluten-free bagels with a golden crust and sprinkled with seeds, placed on a white plate. A modern air fryer sits in the background, adding to the kitchens charm.

Making your own bagels at home might sound intimidating, but trust me, it’s easier than it looks. With this air fryer bagel recipe, you’ll skip the fuss of boiling and baking.

Plus, they’re customizable, so I can make different flavors that work for me and all my boys. Let’s get started.

A gluten-free, freshly baked bagel topped with sesame and poppy seeds sits on parchment paper inside an air fryer basket.

3-Ingredient Bagel Recipe

Prep time: 15 mins

Bake time: 15 mins

Servings: 3

Three glass bowls on a wooden surface. The bowls contain labeled ingredients: Gluten Free Flour, Greek Yogurt, and Baking Powder. The website homemadeheather.com is visible at the bottom.

Ingredients to Make High Protein Bagels

Greek yogurt – this is the magic ingredient that keeps the bagels soft, adds a tangy flavor, and sneaks in some extra protein.
Gluten-free flour blend (or almond flour, with an extra 3 tbsp added) – I like the one from Bob’s Red Mill. This is the backbone of these bagels, giving them structure while keeping them safe for anyone avoiding gluten.
Baking powder – think of this as the secret agent that helps your bagels rise and stay fluffy, even without yeast.
Cooking spray – a quick spritz ensures your bagels don’t stick and gives them that perfect golden-brown finish.
Bagel seasoning (optional, but highly recommended!) – sprinkle on your favorite mix for an extra pop of flavor.

A glass bowl contains a creamy blend of almond flour and yogurt, perfect for crafting gluten-free air fryer bagels. A spatula with a wooden handle rests in the mixture on a wooden surface.

How to Make Gluten Free Bagels

1. In a large bowl, mix the gluten-free flour, baking powder, and a pinch of salt.

A glass bowl with a mixture of crumbled white dough sits on a wooden surface, the beginnings of gluten-free bagels being kneaded to perfection. Soon, theyll transform into golden delights in the air fryer.

2. Stir in the Greek yogurt until a ball of dough forms. If the dough feels sticky, dust your hands with a little extra flour before shaping.

Two raw, gluten-free bagels crafted from dough sit on a round, white plate. The plate rests on a wooden surface. Perfect for an air fryer, these bagels are ready to transform into golden perfection.

3. Divide the dough into three equal pieces. Roll each into a rope, then connect the ends to create that classic bagel shape.

4. Line your air fryer basket with parchment paper and place the bagels inside.

A gluten-free bagel, topped with savory seasoning, rests on parchment paper inside an air fryer basket.

5. Spray with cooking spray and sprinkle with your favorite bagel toppings—think poppy seeds, sesame seeds, or onion flakes.

Optional: Brush with an egg wash before adding toppings for that shiny, bakery-style finish.

6. Air fry at 300 degrees F for 15-20 minutes until the bagels are golden brown.

Try These Variations

Cinnamon Raisin Bagels: Add a little cinnamon and a handful of raisins to the dough.
Savory Cottage Cheese Bagels: Swap the Greek yogurt for cottage cheese for extra flavor.
Mini Bagel Bites: Divide the dough into smaller pieces for snack-sized bagels.

A stack of three homemade gluten-free bagels, sprinkled with seasoning, sits on a white plate. The plate rests on a woven placemat. In the background is an air fryer with a gold handle.

Tips and Tricks

If the dough sticks to your hands, wet them slightly or dust them with flour for easy shaping.
After shaping, pat the tops and sides of the bagels to smooth them out. It’s a little extra love that will give you prettier results.
To keep your bagels light and airy, use gluten-free flour instead of almond flour. Almond flour does not rise.
Add a scoop of unflavored protein powder or use cottage cheese instead of yogurt for an extra protein boost.
Get creative with your toppings. For sweet bagels, try cinnamon sugar. Or use a dash of melted butter and kosher salt or shredded cheese for a savory option.
If you’re making multiple batches for meal prep, bake them on a parchment-lined baking sheet in the oven at 350°F for 20-25 minutes.

Close-up of a hand holding a freshly made gluten-free everything bagel in front of an air fryer. The bagel is golden brown with seasoning, and the persons fingernails are painted with white stripes.

Frequently Asked Questions

Can I make these dairy-free?
Sure thing! Swap the Greek yogurt for a thick dairy-free yogurt like coconut or almond-based options.

Can I make these with regular flour?
Absolutely! Swap the gluten-free flour for self-rising flour or use bread flour if gluten isn’t a concern.

How do I store leftovers?
Store these bagels in an airtight container at room temperature for a day or in the fridge for up to 3 days. Reheat in the air fryer for 2-3 minutes to freshen them up.

Can I freeze the bagels?
Yes! Once cooled, freeze the bagels in a single layer on a baking sheet. Transfer to a freezer bag, and they’ll keep for up to 3 months. Reheat directly from frozen in the air fryer at 300°F for 5-7 minutes.

A homemade bagel with sesame and poppy seeds is baking inside an air fryer lined with parchment paper. The text below reads air fryer bagel recipe homemadeheather.com.

These high protein gluten-free bagels are the perfect blend of convenience, flavor, and nutrition. Whether you’re topping them with cream cheese, avocado, or a fried egg, they’re guaranteed to become your new favorite recipe.

So, what are you waiting for? Grab your ingredients, fire up that air fryer, and get ready to fall in love with homemade bagels.

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